The current Nurion MPI in use is cray-impi/1.1.4, with compiler module intel/19.0.5
Binaries from the EMOD3D repository are currently stored in /home01/hpc11a02/gmsim/opt/nurion/hybrid_sim_tools.
Binaries are all sym linked to the directory current_tools, which itself is a symlink to a combination of compiler and mpi.
The tree structure is represented below:
- hybrid_sim_tools.
- {compiler-version}_{mpi_lib}
- current → Intel-19.0.5_impi
- emod3d_v3.0.8
- hf_v5.4.5
- intel_bin
- gcc_knl
- gcc_noknl
Bashrc:
source /home01/hpc11a02/gmsim/share/bashrc.uceq #gmt binary export PATH=$PATH:/home01/hpc11a02/gmsim/Environments/nurion/ROOT/bin export sharedhome=/home01/hpc11a02
Generating VM perturbations:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:~/pkg/src/fftw-3.3.8/.libs/
Example installation:
Station file path must be specified (todo: update per platform)
python $gmsim/workflow/scripts/cybershake/install_cybershake.py . list.txt 20.4.1.2 --stat_file_path /home01/hpc11a02/gmsim/StationInfo/non_uniform_whole_nz_with_real_stations-hh400_v20p3_land.ll