Parallel HDF5 on Mahuika
Parallel HDF5 on Mahuika with Python
# modules module load Python/3.6.3-gimkl-2017a module load impi/2017.6.256-GCC-5.4.0 module load GCC/5.4.0 module remove HDF5/1.8.18-gimkl-2017a # hdf5 cd src/hdf5-1.8.18 ./configure --prefix=/nesi/project/nesi00213/opt/mahuika/hdf5-parallel/1.8.18 --enable-parallel make install export LD_LIBRARY_PATH=/nesi/project/nesi00213/opt/mahuika/hdf5-parallel/1.8.18/lib:$LD_LIBRARY_PATH # h5py cd src/h5py-2.7.0 python setup.py configure --mpi --hdf5 /nesi/project/nesi00213/opt/mahuika/hdf5-parallel/1.8.18 python setup.py build export PYTHONPATH=/nesi/project/nesi00213/opt/mahuika/python-packages/lib/python3.6/site-packages python setup.py install --prefix=/nesi/project/nesi00213/opt/mahuika/python-packages