Workflow received some refactoring attention this sprint
Duplicate slurm script writing code removed from submit python scripts - resulting in ~260 lines of duplicate code removed
Clean up now runs after all other jobs, rather than being included in sim_im_calc. Clean up no longer compresses the archive made, resulting in speed ups with a minor increase in file size.
Some quality of life changes were made, the default behavior is still the same though:
os.chdir no longer used
slurm scripts for a realisation can be written to and used from anywhere