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then update PATH to use the pip in $HOME/.local/bin/pip
Setup
Setup
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Your Cybershake root directory must contain Runs and Data.
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Go to the Cybershake root directory (eg. /nesi/nobackup/nesi00213/RunFolder/Cybershake/v18p6) and execute the setup.py
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baes@mahuika02: /nesi/nobackup/nesi00213/RunFolder/Cybershake/v18p6$ python /nesi/project/nesi00213/deploy/seisfinder2/tool/setup.py --help
usage: setup.py [-h] [-n NAME] cybershake_dir empirical_dir ll_file
positional arguments:
cybershake_dir Cybershake Root directory eg.
/nesi/nobackup/nesi00213/RunFolder/Cybershake/v18p6
empirical_dir Empirical data root directory eg.
/nesi/nobackup/nesi00213/empiricals/v18p5
ll_file Path to the .ll file
optional arguments:
-h, --help show this help message and exit
-n NAME, --name NAME Optional name for Cybershake. |
module add Python/2.7.14-gimkl-2017a
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empirical_dir: /nesi/nobackup/nesi00213/empiricals/v18p6 fault_list: /scale_wlg_nobackup/filesets/nobackup/nesi00213/RunFolder/Cybershake/v18p6_3/fault_list.csv hazard_dir: /scale_wlg_nobackup/filesets/nobackup/nesi00213/RunFolder/Cybershake/v18p6_3/Hazard ll: /scale_wlg_nobackup/filesets/nobackup/nesi00213/RunFolder/Cybershake/v18p6_3/non_uniform_whole_nz_with_real_stations-hh400_v18p6_land.ll name: v18p6_3 root_dir: /scale_wlg_nobackup/filesets/nobackup/nesi00213/RunFolder/Cybershake/v18p6_3 runs_dir: /scale_wlg_nobackup/filesets/nobackup/nesi00213/RunFolder/Cybershake/v18p6_3/Runs srf_dir: /scale_wlg_nobackup/filesets/nobackup/nesi00213/RunFolder/Cybershake/v18p6_3/Data/Sources |
Run
Go to any Cybershake root directory. (preferably somewhere your home)Make sure machine_env.sh has been imported and and)
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baes@mahuika02: ~$ python ~/nesi/project/nesi00213/deploy/seisfinder2/site/site_search.py --cs-version v18p6_3 --im SA_5p0 --location -42.7012 172.8003 --hazard |
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baes@mahuika02: ~$ python ~/nesi/project/nesi00213/deploy/seisfinder2/site/site_search.py --cs-version v18p6_3 --im SA_5p0 --csv-location /nesi/nobackup/nesi00213/RunFolder/Cybershake/v18p6_2/test.csv --hazard |
Note that once you set parameters, cs-version, im and locations etc., the system remembers them. So you can simply execute the following command and get the same result
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baes@mahuika02: ~$ python /nesi/project/nesi00213/deploy/seisfinder2/site/site_search.py --hazard
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This can be useful if you want to compute deagg for the same location and same setting. You just need to put additional parameters such as exceedance as below.
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baes@mahuika02: ~$ python /nesi/project/nesi00213/deploy/seisfinder2/site/site_search.py --deagg --exceedance 0.0051
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You can make the system forget the setting by --clear switch
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baes@mahuika02: ~$ python /nesi/project/nesi00213/deploy/seisfinder2/site/site_search.py --clear
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If you put --script option, it won't do the calculation. Instead it will output a file hazard_calcs.sh in the current directory. This is useful if you wish to use NeSI to run hazard calculation for all locations.
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baes@mahuika02: ~$ python ~/nesi/project/nesi00213/deploy/seisfinder2/site/site_search.py --cs-version v18p6_3 --im SA_5p0 --csv-location /nesi/nobackup/nesi00213/RunFolder/Cybershake/v18p6_2/test.csv --hazard --script |
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