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This guide is for someone who would like to run a simulation with current library and packaging.

Step-by-step guide

1. How to create a working folder

  1. Get the current working version of gm_sim_pkg by using git clone:

    Bash_code
    $ git clone git@github.com:ucgmsim/gm_sim_pkg.git

  2. Navigate into gm_sim_pkg directory and download the lastest package from the FTP server: ftp://ucquakecore1p.canterbury.ac.nz/seisfinder/gmsim_pack_latest.tar.gz

    Bash_code
    $ wget ftp://ucquakecore1p.canterbury.ac.nz/seisfinder/gmsim_pack_latest.tar.gz

  3. Use install.sh to install the package just downloaded in the following format:

     ./install.sh gmsim_pack_latest.tar.gz [event_date] [event_location] [event_magnitude]

     

    Bash_code
     ./install.sh gmsim_pack_latest.tar.gz 20100904 Darfield 7.1
  4. This starts the installation process.

    =========================================================================
    Event Name: 20100904_Darfield_m7p1
    Run Name: 20100904_Darfield_m7p1_201705191345
    Package to be installed: /home/seb56/gm_sim_pkg/gmsim_pack_20170517_1425.tar.gz
    Run directory: /nesi/projects/nesi00213/RealTime/20100904_Darfield_m7p1_201705191345
    =========================================================================
    Do you wish to proceed? (Y/N) y
    =========================================================================
    Creating directory structure
    =========================================================================
    /home/seb56/tmp already exists.
    /nesi/projects/nesi00213/RealTime/code already exists.
    =========================================================================
    Extracting the package
    =========================================================================
    ./
    ./code/
    ./code/wrapper/
    ./code/wrapper/setup_remote.sh
    ./code/wrapper/make_vm.sh
    ./code/wrapper/make_stat.sh

    ...
    ./GM/Sim/
    ./GM/Sim/Data/
    ./GM/Sim/Figures/
    ./Stat/
    =========================================================================
    Updating the data
    =========================================================================
    From https://github.com/ucgmsim/vm_data
    * branch master -> FETCH_HEAD
    Already up-to-date.
    =========================================================================
    Final touch
    =========================================================================
    >>> Moving to /nesi/projects/nesi00213/RealTime/code from /nesi/projects/nesi00213/RealTime/20100904_Darfield_m7p1_201705191345/code
    >>> Updating vs30-mapping data
    location: /nesi/projects/nesi00213/RealTime/code/Vs30-mapping
    collecting md5sum for file check
    Existing KRIGE_NZGD00_allNZ.Rdata is already good: No need to update
    >>> Making a symbolic link to /home/seb56/tmp/vm_data/Data
    >>> Writing gmsim.cfg
    =========================================================================
    Done!!!!
    =========================================================================

     

  5. Follow the instruction shown on screen to create required Models and files.

    Instructions:
Everyone: !!!!!!!!!!!!!! source /nesi/projects/nesi00213/RealTime/20100904_Darfield_m7p1_201705191345/path.sh !!!!!!!!!!!!!!
VM: 1. cd /nesi/projects/nesi00213/RealTime/20100904_Darfield_m7p1_201705191345/VM
2. config_vm.py mag centroidDepth lon lat
3. test_vm_params.py (if params_vel.py edited)
4. make_vm.sh
Source: 1. cd /nesi/projects/nesi00213/RealTime/20100904_Darfield_m7p1_201705191345/Src
2. config_src.py
3. make_src.sh
Obs: 1. cd /nesi/projects/nesi00213/RealTime/20100904_Darfield_m7p1_201705191345/GM/Obs
2. config_obs.py geoNet_ftp_url
3. make_obs.sh

2. How to create a Velocity Model

  1. Go to the VM directory that instruction has provided
    e.g. $ cd /home/jonney/20100904_Darfield_m7p1_201705181350/VM
  2. Create the config file that is needed for generating a Velocity Model
    $ config_vm.py magnitude centroid_Depth Latitude Longitude
    e.g. $ config_vm.py 7.1  46.00 172.3 -43.6
  3. Edit the parameter file to your requirements with prefered editor
    e.g. $ vim params_vel.py
  4. If you have edited the params_vel.py, please run test_vm_params.py
    $ test_vm_params.py
  5. Run make_vm.sh to create the Velocity Model
    $ make_vm.sh
  6. Follow the instruction given on the screen to provide a path to a admin.

3. How to create Rupture Model (Source)

  1. Go to the Src directory that instruction has provided
    e.g. $ cd /home/jonney/20100904_Darfield_m7p1_201705181350/Src
  2. Create the config file that is needed for generating a Rupture Model
    $ config_src.py type
    e.g. $ config_src.py 2
  3. Go to the folder provided by instrutions
    e.g. $ cd /home/jonney/20100904_Darfield_m7p1_201705181350/Src/Model/20100904_Darfield_m7p1/t2_103245_20170518_175214
  4. Edit the setSrfParams.py
    note: every variables with #!!!PLEASE SPECIFY!!!# must be provided
  5. Create the Model using make_src.sh
    e.g. $ make_src.sh
  6. Follow the instruction given on the screen to provide a path to a admin.

4. How to create observation files

note: you can skip this part if you are running for a future event (not yet happened)

  1. Go to the Obs directory that instruction has provided
    e.g. $ cd /home/jonney/20100904_Darfield_m7p1_201705181350/GM/Obs
  2. Create the config file that is needed
    $ config_obs.py geoNet_ftp_url
    e.g. $ config_obs.py ftp://ftp.geonet.org.nz/strong/processed/Proc/2010/09_Sep/2010-09-04_045556/Vol1/data/
  3. Run make_obs.sh to generate all the files
    e.g. $ make_obs.sh
  4. Follow the instruction given on the screen to provide a path to a admin.

5. How to setup the simulation

  1. After admin tells you that all files are uploaded to Fitzroy, Run setup_remote.sh
    $ setup_remote.sh username
    e.g $ setup_remote.sh jonney

6. Run the simulation on Low Frequency (LF)

  1. Go to the Simulation Folder, located at /nesi/projects/nesi00213/RunFolder/user/run_name
    e.g. $ cd /nesi/projects/nesi00213/RunFolder/ykh22/20100904_Darfield_m7p1_201705181350
  2. Run submit_emod3d.sh
    $ ./submit_emod3d.h
  3. It will ask you to enter a wall_clock_limit and if it should auto submit the job.
    note: if you prefer to change some detail configurations, press 2(no) for auto submit.*
  4. use llsubmit to submit your job if you selected to not to auto submit.
  5. Use llq to check if your job has finished. (job status: R= running, C= Complete, I = idle)
    $ llq -u user
  6. After Emod3d finished, run submit_post_emod3d.sh
    note: if you prefer to change some detail configurations, press 2(no) for auto submit.*
    $ ./submit_post_emod3d.sh

7. Run the simulation on High Frequency (HF)

note: this part can run before LF is finished

  1. Run install_bb.sh, to setup the parameters
    $ ./install_bb.sh
  2. Choose from the options according to simulation requirement
  3. Run submit_hf.sh
    $ ./submit_hf.sh
    note: if you prefer to change some detail configurations, press 2(no) for auto submit.*

*: use llsubmit to submit your job if you selected not to auto submit. $ llsubmit job.ll

8. Run the Simulation on Broadband (BB)

Note: This part MUST wait untill both LF and HF are finished

  1. Run submit_bb.sh
    $ ./submit_bb.sh




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