The automated workflow currently has the following layout. See below for a legend and summary of step inputs and outputs.
The steps have the following inputs and outputs:
All files after installation can be assumed to require sim/fault/root params as inputs
| Index | Step | Inputs | Outputs | Description | Notes |
|---|---|---|---|---|---|
| 1 | EMOD3D | Srf file VM | EMOD3D seis files EMOD3D xyts files | Performs the low frequency simulation | |
| 2 | merge_ts | EMOD3D xyts files | Merged xyts file | Merges the xyts files from EMOD3D together | |
| 3 | plot_ts | Merged xyts file | LF animation | Produces an animation from the merged EMOD3D xyts file | |
| 4 | HF | Stoch file Station ll file | HF binary file | Performs the high frequency "simulation" | |
| 5 | BB | EMOD3D seis files HF binary file | BB binary file | Merges the low frequency and high frequency binaries together into a BroadBand (BB) binary | |
| 6 | IM_calc | BB binary | IM calculations csv file | Calculates intensity measures for each station from the BB data | |
| 7 | IM_plot | IM calculations csv file | Graphs of IMs | Plots IM values | |
| 8 | rrup | Srf file Station ll file | rrup csv file | Calculates station to fault/event distances | |
| 9 | Empirical | rrup csv file empirical config file | Empirical calculations csv file | Computes empirical intensity measures | |
| 10 | Verification | Empirical calculations file | ? | Currently not fully implemented | |
| 11 | clean_up | All non binary/log/IM_calc files | Tar files | Tars all non-final output files together into a single tar file | Intended to reduce the inode usage of completed runs |
| 12 | LF2BB | EMOD3D seis files | BB binary file | Converts an LF only run to the BB format | |
| 13 | HF2BB | HF binary file | BB binary file | Converts an HF only run to the BB format | |
| 14 | plot_srf | Srf file | Plot of srf slip values | Plots the srf slip values | |
| 15 | advanced_IM | BB binary | OpenSees output files | Runs OpenSees on each station waveform | |
| 16 | VM_PARAMS | Median realisation file | vm_params yaml file | Generates a vm_params file from the median realisation file for an event | |
| 17 | VM_GEN | vm_params yaml file | Velocity Model (VM) | Uses the vm_params file to generate an NZVM velocity model | |
| 18 | VM_PERT | vm_params yaml file | Velocity Model Perturbation file (VM) Updates sim_params.yaml to use the perturbations | Generates perturbation files from vm_params data. | Mutually exclusive with NO_VM_PERT |
| 19 | Install event/fault | Fault/Event name Velocity model | Fault_params yaml file fd station lists | Generates the fd station lists and fault_params yaml file for a given event/fault | |
| 20 | NO_VM_PERT | None | None | Empty step | Mutually exclusive with VM_PERT Makes dependencies easier, as a way of preventing short circuits when running with perturbations. |
| 21 | INSTALL_REL | Sim_params source file | sim_params yaml file | Installs a realisation, creating its runs directory, sim_params yaml file and initial step specific sub-directories (LF, HF, BB) | |
| 22 | SRF_GEN | Realisation file | Srf file Stoch file Srfinfo file Sim_params source file | Generates the srf/stoch/srfinfo/sim_params files from a realisation file |