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1. Source generation
   1. Viktor/Hoby
2. Velocity model generation
   1. Ethan
3. Observed ground motions
   1. Ahsan
4. Ground motion simulation computation (Sung)
   1. Upload Rupture model to /nesi/projects/nesi00213/RupModel/Realtime/MonYEAR where MonYear is like Dec2016, Jan2017. Under this directory, you need Srf and Stoch.
   2. Upload Velocity model to /nesi/projects/nesi00213/VelocityModels/. Currently we have Canterbury or South_Island. Unless it is a Canterbury specific model, place it under South_Island. We will be doing some clean up later.
      Your velocity model should include rho3dfile.d, vp3dfile.p, vs3dfile.s, params_vel.py and outputs from gen_cords (gridfile, gridout, model_bounds, model_coords, model_params).
   3. Upload station files to /nesi/projects/nesi00213/StationInfo. This should include geonet_stations_xxx.ll, .vs30 and .vs30ref.
   4. Go to /nesi/projects/nesi00213/RunFolder and execute ./install.sh. and follow the instruction.
   5. During install.sh, it will advise you expected wallclock time. Enter a sensible wall clock time.
   6. Follow the remaining instruction.
   7. Sung
      
      
5. simulation post-processing
   1. Viktor/Hoby
   2. General Plotting Instructions:
      run on hypocentre, not fitzroy
      make sure the scripts are in PATH (hypocentre):
      export PATH=$PATH:/nesi/projects/nesi00213/gm_sim_workflow/devel
   3. Plotting Station based data such as IMs, Vs30, Observed PGA, pSA:
      plot_stations.py datafile.ll
      Run on hypocentre, datafile has 6 line header as described at the top of plot_stations.py
   4. Plotting Timeslice based data (includes PGV, MMI, timeslice animation) on hypocentre:
      plot_transfer.py auto /nesi/projects/nesi00213/RunFolder/baes/RT2017Jan17_VMSI_20170117_drill_200m-h0p200_EMODv3p0p4_170116 .
      will copy the remote fitzroy folder to the current directory (.) and start plotting using defaults
      run plot_ts_sum.py to re-run PGV and MMI plots
      run plot_ts.py to re-run timeslice image creation 

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