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| Code Block |
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python $gmsim/workflow/workflow/automation/execution_scripts/run_cybershake.py
<Path to root of simulation directory>
<The user name to be used with the HPC scheduler>
[<Path to the task configuration file to be used> (Defaults to a file in the slurm_gm_workflow repository which runs EMOD3D, HF, BB, IM_calc and clean_up on all realisations)]
[--sleep_time <How long each sub script should sleep for before restarting> (Defaults to 5, generally shouldn't need to be changed)]
[--n_max_retries <How many times an individual task should be attempted before requiring user intervention>]
[--n_runs <The number of jobs that can run simultaneously> (Takes either 1 value, or a number of values equal to the number of available HPCs]
[--log_folder <Location log files should be placed>]
[--debug (Print debug log messages to the terminal)] |
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| Code Block |
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python $gmsim/workflow/workflow/automation/execution_scripts/run_cybershake.py . $USER gmsim/workflow/workflow/examples/task_config_prepro.yaml |
| Info |
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| Update $USER argument is no longer needed |
5) Estimate corehours
After velocity models have been generated core hour estimation should be run to determine the amount of core hours required to run the simulation.
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