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Error: /cm/shared/apps/intel/compilers_and_libraries/2017.6.256/linux/mkl/lib/intel64/libmkl_gf_lp64.so: error: undefined reference to 'mkl_lapack_*'
Solution:
Remove
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mkl
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module
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melody.zhu@mahuika02 ~/gmt/build> module rm imkl/2017.6.256-gimpi-2017a |
edit link.txt manaully and remove lmkl_gf_lp64 flag
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$find . -name "link.txt" | xargs grep lmkl_gf_lp64 | cut -d: -f1 | xargs -I % sed -i -e 's?-lmkl_gf_lp64??g' % |
Error:
/opt/nesi/mahuika/binutils/2.28-GCCcore-7.1.0/bin/ld: warning: libopenjp2.so.7, needed by /opt/nesi/mahuika/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/opt/nesi/mahuika/binutils/2.28-GCCcore-7.1.0/bin/ld: warning: libpq.so.5, needed by /opt/nesi/mahuika/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/opt/nesi/mahuika/binutils/2.28-GCCcore-7.1.0/bin/ld: warning: libkea.so.1.4.6, needed by /opt/nesi/mahuika/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/opt/nesi/mahuika/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1/lib/libgdal.so: undefined reference to `kealib::KEAImageIO::setImageBandClrInterp(unsigned int, kealib::KEABandClrInterp)'
/opt/nesi/mahuika/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1/lib/libgdal.so: undefined reference to `PQputCopyEnd'
/opt/nesi/mahuika/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1/lib/libgdal.so: undefined reference to `opj_create_compress'
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